CPM : combinatorial pattern matching (Aarhus, June 30 - July 2, 1997)Apostolico, Alberto; Hein, Jotun.Lecture notes in computer science. 1997, issn 0302-9743, isbn 3-540-63220-4, VIII, 274 p, isbn 3-540-63220-4Conference Proceedings

Using hidden Markov models and observed evolution to annotate viral genomesMCCAULEY, Stephen; HEIN, Jotun.Bioinformatics (Oxford. Print). 2006, Vol 22, Num 11, pp 1308-1316, issn 1367-4803, 9 p.Article

Gene finding with a hidden Markov model of genome structure and evolutionPEDERSEN, Jakob Skou; HEIN, Jotun.Bioinformatics (Oxford. Print). 2003, Vol 19, Num 2, pp 219-227, issn 1367-4803, 9 p.Article

Direct construction of Compact Directed Acyclic Word graphsCROCHEMORE, M; VERIN, R.Lecture notes in computer science. 1997, pp 116-129, issn 0302-9743, isbn 3-540-63220-4Conference Paper

Aligning coding DNA in the presence of frame-shift errorsARVESTAD, L.Lecture notes in computer science. 1997, pp 180-190, issn 0302-9743, isbn 3-540-63220-4Conference Paper

Estimating the probability of approximate matchesKURTZ, S; MYERS, G.Lecture notes in computer science. 1997, pp 52-64, issn 0302-9743, isbn 3-540-63220-4Conference Paper

Iterative versus simultaneous multiple sequence alignmentDRESS, A.Lecture notes in computer science. 1997, issn 0302-9743, isbn 3-540-63220-4, p. 275Conference Paper

Space- and time-efficient decoding with canonical Huffman treesKLEIN, S. T.Lecture notes in computer science. 1997, pp 65-75, issn 0302-9743, isbn 3-540-63220-4Conference Paper

A filter method for the weighted local similarity search problemOHLEBUSCH, E.Lecture notes in computer science. 1997, pp 191-205, issn 0302-9743, isbn 3-540-63220-4Conference Paper

A new algorithm for the ordered tree inclusion problemRICHTER, T.Lecture notes in computer science. 1997, pp 150-166, issn 0302-9743, isbn 3-540-63220-4Conference Paper

An easy case of sorting by reversalsTRAN, N.Lecture notes in computer science. 1997, pp 83-89, issn 0302-9743, isbn 3-540-63220-4Conference Paper

Modern comparative lexicostatisticsKRUSKAL, J. B.Lecture notes in computer science. 1997, issn 0302-9743, isbn 3-540-63220-4, p. 276Conference Paper

On incremental computation of transitive closure and greedy alignmentABDEDDAÏM, S.Lecture notes in computer science. 1997, pp 167-179, issn 0302-9743, isbn 3-540-63220-4Conference Paper

A stochastic model for the evolution of metabolic networks with neighbor dependenceMITHANI, Aziz; PRESTON, Gail M; HEIN, Jotun et al.Bioinformatics (Oxford. Print). 2009, Vol 25, Num 12, pp 1528-1535, issn 1367-4803, 8 p.Article

Minimum recombination histories by branch and boundLYNGSØ, Rune B; SONG, Yun S; HEIN, Jotun et al.Lecture notes in computer science. 2005, pp 239-250, issn 0302-9743, isbn 3-540-29008-7, 1Vol, 12 p.Conference Paper

Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparisonMITHANI, Aziz; PRESTON, Gail M; HEIN, Jotun et al.Bioinformatics (Oxford. Print). 2009, Vol 25, Num 14, pp 1831-1832, issn 1367-4803, 2 p.Article

StatAlign : an extendable software package for joint Bayesian estimation of alignments and evolutionary treesNOVAK, Adam; MIKLOS, Istvan; LYNGSØ, Rune et al.Bioinformatics (Oxford. Print). 2008, Vol 24, Num 20, pp 2403-2404, issn 1367-4803, 2 p.Article

Combining statistical alignment and phylogenetic footprinting to detect regulatory elementsSATIJA, Rahul; PACHTER, Lior; HEIN, Jotun et al.Bioinformatics (Oxford. Print). 2008, Vol 24, Num 10, pp 1236-1242, issn 1367-4803, 7 p.Article

Annotation of selection strengths in viral genomesMCCAULEY, Stephen; DE GROOT, Saskia; MAILUND, Thomas et al.Bioinformatics (Oxford. Print). 2007, Vol 23, Num 22, pp 2978-2986, issn 1367-4803, 9 p.Article

Comparative annotation of viral genomes with non-conserved gene structureDE GROOT, Saskia; MAILUND, Thomas; HEIN, Jotun et al.Bioinformatics (Oxford. Print). 2007, Vol 23, Num 9, pp 1080-1089, issn 1367-4803, 10 p.Article

Flexible identification of structural objects in nucleic acid sequences : Palindromes, mirror repeats, pseudoknots and triple helicesSAGOT, M.-F; VIARI, A.Lecture notes in computer science. 1997, pp 224-246, issn 0302-9743, isbn 3-540-63220-4Conference Paper

Trie-based data structures for sequence assemblyCHEN, T; SKIENA, S. S.Lecture notes in computer science. 1997, pp 206-223, issn 0302-9743, isbn 3-540-63220-4Conference Paper

An improved pattern matching algorithm for strings in terms of straight-line programsMIYAZAKI, M; SHINOHARA, A; TAKEDA, M et al.Lecture notes in computer science. 1997, pp 1-11, issn 0302-9743, isbn 3-540-63220-4Conference Paper

External inverse pattern matchingGASIENIEC, L; INDYK, P; KRYSTA, P et al.Lecture notes in computer science. 1997, pp 90-101, issn 0302-9743, isbn 3-540-63220-4Conference Paper

Approximation algorithms for the fixed-topology phylogenetic number problemCRYAN, M; GOLDBERG, L. A; PHILLIPS, C. A et al.Lecture notes in computer science. 1997, pp 130-149, issn 0302-9743, isbn 3-540-63220-4Conference Paper